Index Introduction to Unix Unix Basics 1 Introduction to Job Scheduling: SLURM Introduction to GNU parallel Introduction to HPC Unix Admin commands Grep Sed Introduction to regular expressions HPC How to Install a Program SSH SSH Shortcuts Password-less SSH SLURM SLURM Cheatsheet SLURM Job Submission Dependencies Submitting dependency jobs using SLURM XSEDE XSEDE supercomputer XSEDE supercell storage Containers Introduction to Containers Creating Containers Using Singularity Modifying Existing Containers Bioawk Bioawk Basics Viewing Files In Remote Machine Without Downloading Next Table of contents