FastQCFastQC Report
Thu 14 Mar 2019
SRR2093872_2.fastq.gz

Summary

[OK]Basic Statistics

MeasureValue
FilenameSRR2093872_2.fastq.gz
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences7366523
Sequences flagged as poor quality0
Sequence length100
%GC34

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[OK]Overrepresented sequences

No overrepresented sequences

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
CGATAAC225550.070.876481
GATAACT236600.067.864492
GCATAAC176050.067.509211
CATAACT187900.063.4018862
TCGGGGG15450.031.99319838-39
GGGCGCC10450.030.82573942-43
CTCGGGG7500.030.75790636-37
GGCGCCG7700.029.59049644-45
GGGTCGC4650.028.31680742-43
TCTCGGG7050.026.04338536-37
GGGGCGC8700.025.13465342-43
GTCGCCG18950.024.17111444-45
TCCGGGG5800.023.94367838-39
GGCGCCC5500.023.06228444-45
GATCTCG24700.022.26970934-35
CCGGGGG7050.021.70156538-39
GAGCGGC11200.021.4044489
GGCCGGG3050.020.80530212-13
CGTCGGG3400.020.73730912-13
GATCGGA47750.020.6842481
Produced by FastQC (version 0.11.3)